Ah I managed to figure out my injection problem. As a result of some of the security measures I use for my windows account it wasn't allowing administrative rights to EQ as well as MQ2 - all fixed up and happy, now!
Ah. So I opened and built the 2012 file - however, now that I have an exe moved to the C:\MQ2 file and other files, whenever I try and run it with the game running I get an error that says, "Open Process(8112) failed : 5 - Error in inject" and then nothing ever happens in EQ.
Yup, it's authenticated - you can open the auth file and see the keys generated inside the folder. It's something with VS2013 - it says the following when it fails to convert: "MQ2Main\MQ2Main.dsp: Unable to convert project. Please make sure this is a valid Visual C++ 6.0 project."
I've installed VC2013 professional but whenever I try and compile the MQ2Main it says it can't convert the project.. Any ideas? Google has let me down.